I am currently a research scientist at Facebook Research. My research interests include representation learning for time-series, causal inference, and information theory.
Previously, I worked at CTRL-labs using machine learning to enable neural interfaces. Prior to that, I worked with Vijay Pande at Stanford on the statistical modeling and generation of temporal embeddings for biomolecular dynamics.
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Title Author(s) Journal Citations Year 1 MDTraj: a modern, open library for the analysis of molecular dynamics trajectories RT McGibbon, KA Beauchamp, MP Harrigan, C Klein, JM Swails, ... Biophysical Journal 109 442 2015 2 Markov state models provide insights into dynamic modulation of protein function D Shukla, CX Hernández, JK Weber, VS Pande Accounts of chemical research 48 (2) 132 2015 3 MSMBuilder: statistical models for biomolecular dynamics MP Harrigan, MM Sultan, CX Hernández, BE Husic, P Eastman, ... Biophysical journal 112 (1) 106 2017 4 Variational encoding of complex dynamics CX Hernández, HK Wayment-Steele, MM Sultan, BE Husic, VS Pande Physical Review E 97 (6) 43 2018 5 Osprey: Hyperparameter Optimization for Machine Learning RT McGibbon, CX Hernández, MP Harrigan, S Kearnes, MM Sultan, ... The Journal of Open Source Software 1 21 2016 6 MSMExplorer: Data Visualizations for Biomolecular Dynamics CX Hernández, MP Harrigan, MM Sultan, VS Pande The Journal of Open Source Software 2 (12) 9 2017 7 ParmEd J Swails, C Hernandez, DL Mobley, H Nguyen, LP Wang, P Janowski 9 8 Structure‐based network analysis of an evolved g‐protein coupled receptor homodimer interface SE Nichols, CX Hernández, Y Wang, JA McCammon Protein Science 8 2013 9 Using Deep Learning for Segmentation and Counting within Microscopy Data CX Hernández, MM Sultan, VS Pande arXiv preprint arXiv:1802.10548 3 2018 10 MDEntropy: Information-Theoretic Analyses for Molecular Dynamics. CX Hernández, VS Pande J. Open Source Software 2 (19) 3 2017 11 Kinetic Machine Learning Unravels Ligand-Directed Conformational Change of μ Opioid Receptor EN Feinberg, AB Farimani, CX Hernández, VS Pande bioRxiv 3 2017 12 Understanding the origins of a pandemic virus CX Hernández, J Chan, H Khiabanian, R Rabadan arXiv preprint arXiv:1104.4568 2 2011 13 Modelling Intrinsically Disordered Protein Dynamics as Networks of Transient Secondary Structure HK Wayment-Steele, CX Hernandez, VS Pande bioRxiv 1 2018 14 Towards a Deeper Understanding of Molecular Mechanics CX Hernández Stanford University 2018